fibonacci heap implementation


Add p[x] to the root list, updating min pointer if necessary. In their simplest version they require storage and manipulation of four pointers per node, whereas only two or three pointers per node are needed in other structures, such as, This page was last edited on 4 November 2021, at 23:51. The parent of the node is then cut if it is marked, this continues for each anscestor until a parent that is not marked is encountered, which is then marked. = Operation find minimum is now trivial because we keep the pointer to the node containing it. ⁡. Add tree rooted at ‘x’ to the root list and update min pointer if necessary. Although the total running time of a sequence of operations starting with an empty structure is bounded by the bounds given above, some (very few) operations in the sequence can take very long to complete (in particular delete and delete minimum have linear running time in the worst case). - fast find-min 23 7 30 17 35 26 46 24 H 39 18 52 41 3 44 min 6 . A fibonacci heap is a data structure that consists of a collection of trees which follow min heap or max heap property. Then we call extract minimum to remove it. Cut off the link between ‘x’ and its parent p[x]. + A JavaScript implementation of the Fibonacci heap data structure. Bachelor of Technology (2016 to 2020) in Production Engineering at National Institute of Technology Tiruchirappalli, Kosaraju algorithm is a DFS based algorithm used to find Strongly Connected Components(SCC) in a graph. Therefore, the Fibonacci-heap implementation does not make Jarnik's algorithm asymptotically faster for dense graphs. d It is an advanced amortized data structure, whose amortized performance is better than common collections like Linked List.However, some of its operations can run as slowly as linear time in worst case, therefore make it inappropriate for .

• decrease-key takes O(1) amortized time. ) 2

They are complicated when it comes to implementing them. = 100% test coverage; Supports all common heap operations; Store keys with optional associated values; Optional custom compare function that can utilize both key and value to give full control over the order of the data; Install It was developed after a quest to improve Dijkstra's Shortest Path Algorithm from O (E log V ) to O (E + V log V ). The Fibonacci heap ruins my life. Extracts and returns the minimum node from the heap. One node can become marked. The Fibonacci heap seems to have the better worst case complexity for (1) insertion, (2) deletion and (2) finding the minimum element. This flexibility allows some operations to be executed in a lazy manner, postponing the work for later operations. The amortized performance of a Fibonacci heap depends on the degree (number of children) of any tree root being O(log n), where n is the size of the heap. One such structure, the Brodal queue,[4] is, in the words of the creator, "quite complicated" and "[not] applicable in practice." 0 The pointer to the minimum node is then updated if the node’s new value is less than the current minimum. ⁡ Created in 2012, the strict Fibonacci heap[5] is a simpler (compared to Brodal's) structure with the same worst-case bounds. Title: Dijkstra's Algorithm Fibonacci Heap Implementation Author: amb Last modified by: Amber McKenzie Created Date: 9/1/2008 12:17:03 AM Document presentation format Fibonacci heaps are similar to binomial heaps but Fibonacci heaps have a less rigid structure. The minimum element pointer is updated if necessary. It has a better amortized running time than a binomial heap. Also, each marked node has two units of time stored. The analysis in this paper shows that a fine-grained synchronized Fibonacci Heap implementation with certainly relaxed semantics is more scalable with . CASE 2 - If min heap order violated and parent of ‘x’ is unmarked. The Need for decrease-key An important operation in many graph algorithms. A Fibonacci heap is a collection of trees satisfying the minimum-heap property, that is, the key of a child is always greater than or equal to the key of the parent. The Fibonacci heap capitalizes on batching and is able to speed up insert & decrease-key operations as a result. Also, every node in Fibonacci Heap has degree at most O(log n) and the size of a subtree rooted in a node of degree k is at least F k+2, where F k is the kth Fibonacci number. I was able to write the increase-key operation for a binary min-heap, wherein, I exchange increased key with the least child recursively. Operation insert works by creating a new heap with one element and doing merge. Here are time complexities[8] of various heap data structures. So at it's core, what is a Fibonacci heap? d
In computer science, a Fibonacci heap is a data structure for priority queue operations, consisting of a collection of heap-ordered trees.It has a better amortized running time than many other priority queue data structures including the binary heap and binomial heap. Clears the heap's data, making it an empty heap. Returns boolean Whether the heap is empty. PDF Fibonacci Heaps - Stanford University The actual time to perform the cutting was O(k), therefore (again with a sufficiently large choice of c) the amortized running time is constant. Heap ordered trees implementation. Decrease the value of the node to be deleted ‘x’ to minimum by Decrease Key function. Thanks! The number of trees is decreased in the operation delete minimum, where trees are linked together. Fibonacci Heap - SlideShare pq.find-min(): Find the minimum of all tree roots. Each tree has an order just like the binomial heap that is based on the number of children. This project provides a Java implementation of Fibonacci Heap. - fast union Pointer to root of tree with min element. This was improved on with the Fibonacci heap implementation of Dijkstra's algorithm [2] which has a time complexity of O(m+nlogn).

Represent trees using left-child, right sibling pointers and circular, doubly linked list. In the process we create some number, say k, of new trees. Moreover, we maintain a pointer to the root containing the minimum key. The main difference is Fibonacci heaps have better big-O for some operations, and also supports . If degrees are same then join the Fibonacci trees by union operation. For the meaning of "O(f)" and "Θ(f)" see Big O notation. . On the other hand, binary heaps get a great deal of performance from their implementation as an array; using an explicit pointer structure means Fibonacci heaps suffer a huge performance hit.

Do đó tổng thời gian của thuật toán Dijkstra với Fibonacci Heap là: O ( V log. However . pq.enqueue(v, k): Meld pq and a singleton heap of (v, k). Else, cut off p[p[x]] and repeat steps 4.2 to 4.5, taking p[p[x]] as ‘x’. We support make-heap, insert, find-min, meld and decrease-key in worst-case O (1) time, and delete and delete-min in worst-case O (lg n) time, where n is the size of the heap. Answer (1 of 3): 1. I ran my program on a data set that has two-hundred nodes in a densely . Same for insert and union. The trees in a Fibonacci heap are not constrained to be binomial trees, however. Viewed 323 times 3 $\begingroup$ Let's say that Dijkstra's algorithm with the priority queue using a d-ary heap. give good worst-case performance for all Fibonacci heap operations except merge. We prove by induction on the height of x (the length of a longest simple path from x to a descendant leaf), that size(x) ≥ Fd+2, where d is the degree of x. (chapter 19) Fibonacci heap supports mergeable-heap operations, including make-heap, insert, minimum, extract-min, and union. x and a pointer to min HOT root. (and not executable) I E.g. (We then have Its name derives from the fact that the Fibonacci sequence is used in the complexity . The actual running time is O(log n + m) where m is the number of roots at the beginning of the second phase. * Ther. Then, t(H') = t(H) + 1 and m(H') = m(H) and the increase in potential is (t(H) + 1) + 2m(H)) - (t(H) + 2m(H)) = 1.Since the actual cost is O(1), the amortized cost is O(1) + 1 = O(1). Fibonacci heaps A Fibonacci heap is an interesting variant of heaps, which in some ways is similar to a binomial heap. First of all, it also consists of many trees, but there are no constraints regarding the shape of each tree, so it is much more flexible than the binomial heap. . d ≥ - Total time: O(log n). This proves the claim. 2 I have found that in Java there is a class PriorityQueue that is a balanced binary heap. F In a binary or binomial heap, such a sequence of operations would take O((a + b) log n) time.

Starting from empty Fibonacci heap, any sequence of a1 insert, a2 delete-min, and a3 decrease-key operations takes O(a1 + a2 log n . 2 Theorem. , which gives the desired lower bound on size(x). ∑ Answer (1 of 7): Its a Data Structure. It is also possible to merge two Fibonacci heaps in constant amortized time, improving on the logarithmic merge time of a binomial heap, and improving on binary heaps which cannot handle merges efficiently. A pointer to minimum node of the root list is always kept up to date. d The decrease key operation marks a node when its child is cut from a tree, this allows it to track some history about each node. As happens with any other nodes of a heap, a fibonacci heap's node has key and data attributes and, since it's a element of a linked list, it also has two pointer left and right that points to its neighbors. By using min heap property, heapify the heap containing ‘x’, bringing ‘x’ to the root list. using System; using System.Collections.Generic; using System.Linq; namespace DataStructures.Heap.FibonacciHeap { /// <summary> /// A . It is based on the idea that if one is able to reach a vertex v starting from vertex u, then one should be able to reach vertex u starting from vertex v, Count all the possible paths from top left to bottom right of a m x n matrix with the constraints that from each cell you can either move only to right or down. A Fibonacci heap is a heap data structure similar to the binomial heap. For the amortized running time analysis, we use the potential method, in that we pretend that very fast operations take a little bit longer than they actually do. Operation decrease key will take the node, decrease the key and if the heap property becomes violated (the new key is smaller than the key of the parent), the node is cut from its parent. These were introduced because the Node inner class has private fields, but all of the field access is done in the outer class. /* C program to implement Fibonacci heap tree */. ≥ V) ( 2) Nếu Heap mà chúng ta sử dụng là Fibonacci Heap , thì thao tác (1) có thể thực hiện trong O ( log. {\displaystyle \varphi =(1+{\sqrt {5}})/2\doteq 1.618} V) và (2) có thể thực hiện trong O ( 1). boost Fibonacci heap. It passes pylint and pep8, is thoroughly unit tested, and runs on CPython 2. φ F Then, potential of the heap = 5 + 2.3 = 11. Define size(x) to be the size of the tree rooted at x (the number of descendants of x, including x itself). For each node, we maintain its number of children and whether the node is marked. The additional complexity of Fibonacci heaps will likely make them slower for operations on smaller heaps. However, at some point order needs to be introduced to the heap to achieve the desired running time. 2 1 Unlike trees within binomial heaps, which are ordered, trees within Fibonacci heaps are rooted but unordered. To create a heap named myHeap, one should execute the following MATLAB command: myHeap=cFibHeap. d However to complete the extract minimum operation, we need to update the pointer to the root with minimum key. js-fibonacci-heap. For this reason Fibonacci heaps and other amortized data structures may not be appropriate for real-time systems. + φ The Fibonacci heap keeps track of the smallest root in it's list of heaps. ≐ Answer (1 of 3): 1. Notwithstanding, you can squeeze a little bit more performance, in light of these results (with -O3 speed optimization) when loading 1e7 integers and then popping them all:. The operations decrease_key, make_heap, insert, and meld can be done in time O(1). V) + ∑ u ∈ V d − ( u) = O ( V log. Brute force approach takes exponential time while dynamic programming takes O(M*N) time complexity, OpenGenus IQ: Computing Expertise & Legacy, The node has had no children cut (unmarked), The node has had a single child cut (marked), The node is about to have a second child cut (removing a child of a marked node). The Binomial Heap A binomial heap is a collection of heap-ordered binomial trees stored in ascending order of size. d-ary heap implementation vs Fibonacci heap implementation Dijkstra performance comparions. definition. The heaps are written in a similar way as in the JDK It does not depend on other libraries, so classpathing 'jheaps.jar' is sufficient to use in your project. [One can even realize priority queues with worst case times as above] Features of the Implement Fibonacci Heap program. A Fibonacci heap is a specific implementation of the heap data structure that makes use of Fibonacci numbers.Fibonacci heaps are used to implement the priority queue element in Dijkstra's algorithm, giving the algorithm a very efficient running time.. Fibonacci heaps have a faster amortized running time than other heap types. 2 Like a binomial heap, a Fibonacci heap is a collection of heap-ordered trees. Fibonacci heaps are interesting * theoretically because they have asymptotically good runtime guarantees * for many operations. The most time-consuming operation is delete_min in time O(log n). This takes O(log n) time and the potential does not change. F This implies that the minimum key is always at the root of one of the trees. We have already discussed min heap and max heap property in the Heap Data Structure article. This is a stricter boundary. rank(H) = max rank of any node in heap H. marks(H) = number of marked nodes in heap H. Make x as the only node in the root list. #include<stdio.h>. Decrease the value of the node ‘x’ to the new chosen value. For the figure above, A routine induction proves that F Recently I learned that when Dijkstra Algorithm is implemented with a fibonacci heap, the time complexity tremendously reduces to O(E+Vlog(V)), where E is the edges and V is the Vertices of the graph. Given the implementation afterwards, it is a constant time operation. {\displaystyle \varphi } Fibonacci heap is a heap data structure consisting of a collection of trees. The nodes x and y1 each contribute at least 1 to size(x), and so we have, size heap implementation of Dijkstra's algorithm has a time complexity ofO(m + nlogn), the same as the Fibonacci heap implementation. A couple of Sundays ago, I wrote an implementation of Dijkstra's algorithm in Clojure. At the end we will have at most O(log n) roots (because each has a different degree). The data structure uses linear space. It uses Fibonacci numbers and also used to implement the priority queue element in Dijkstra’s shortest path algorithm which reduces the time complexity from O(m log n) to O(m + n log n), giving the algorithm a huge boost in terms of running time. 1 Indexed Fibonacci heap implementation. 13 Definition and Elementary Operations The Fibonacci heap data structure invented by Fredman and Tarjan in 1984 gives a very efficient implementation of the priority queues. CASE 3 - If min heap order is violated and parent of ‘x’ is marked. 21/33 I Extremely compact, readable program: just 19 rules I Pseudo-code descriptions of Fibonacci Heaps are usually longer! Extract minimum is then called on the node to remove it from the heap. • insert takes O(1) time. 0

Operation extract minimum (same as delete minimum) operates in three phases. {\displaystyle n\geq F_{d+2}\geq \varphi ^{d}} I am considering the naive, priority queue with binary heap and priority queue with Fibonacci heap type implementations where I am using existing open-source implementation of the Fibonacci heap.… In the second phase we therefore decrease the number of roots by successively linking together roots of the same degree. Fibonacci heaps are asymptotically faster than binary and binomial heaps, but this does not necessarily mean they are faster in practice. Much of a Fibonacci heap’s speed advantage comes from the fact that it delays consolidating heaps after operations until extract-min is called. This implies that the minimum key is always at the root of the tree. A Fibonacci heap is a heap data structure similar to the binomial heap.

When a second child is cut, the node itself needs to be cut from its parent and becomes the root of a new tree (see Proof of degree bounds, below). View Lab Report - fibonacci heap implementation in c from COMPUTER S 432 at Heera College Of Engineering And Technoloty. Figure 21.1 (a) shows an example of a Fibonacci heap. + As we shall see, Fibonacci heaps allow us to do much better. They are not as efficient in practice when compared with the theoretically less efficient forms of heaps. {\displaystyle 1+\sum _{i=0}^{d}F_{i}=F_{d+2}} Its children will become roots of new trees.

As happens with any other nodes of a heap, a fibonacci heap's node has key and data attributes and, since it's a element of a linked list, it also has two pointer left and right that points to its neighbors. For the Fibonacci heap, the find-minimum operation takes constant (O(1)) amortized time. Fibonacci heap is a draft programming task.

When two roots u and v have the same degree, we make one of them a child of the other so that the one with the smaller key remains the root. [7], Data structure for priority queue operations, CS1 maint: DOI inactive as of October 2021 (, "Fibonacci heaps and their uses in improved network optimization algorithms", Journal of the Association for Computing Machinery, "The pairing heap: a new form of self-adjusting heap", Society for Industrial and Applied Mathematics, "Binomial Heap | Brilliant Math & Science Wiki", "On the Efficiency of Pairing Heaps and Related Data Structures", http://www.cs.princeton.edu/~wayne/kleinberg-tardos/pdf/FibonacciHeaps.pdf, Java applet simulation of a Fibonacci heap, De-recursived and memory efficient C implementation of Fibonacci heap, Ruby implementation of the Fibonacci heap (with tests), Pseudocode of the Fibonacci heap algorithm, Various Java Implementations for Fibonacci heap, https://en.wikipedia.org/w/index.php?title=Fibonacci_heap&oldid=1053617652, CS1 maint: DOI inactive as of October 2021, Short description is different from Wikidata, Articles to be expanded from February 2015, Creative Commons Attribution-ShareAlike License, Michael L. Fredman and Robert Endre Tarjan.
Comparision of time complexities for various operations: To determine the amortized cost of FIB-HEAP-INSERT, let H be the input Fibonacci heap and H' be the resulting Fibonacci heap. Therefore, the difference in the potential function from before this phase to after it is: O(log n) − m, and the amortized running time is then at most O(log n + m) + c(O(log n) − m).

5 Fibonacci Heaps: Implementation Implementation.

⁡. With a sufficiently large choice of c, this simplifies to O(log n). - can quickly splice off subtrees Roots of trees connected with circular doubly linked list. They have some advantages, which greatly reduce their amortised operation cost. Since the goal is to find a way to minimize the number of operations needed to . For example, merging heaps is done simply by concatenating the two lists of trees, and operation decrease key sometimes cuts a node from its parent and forms a new tree. Forhighgraphdensities, the number ofedges,m, is comparableton2, giving the binary heap implementation a time of O(n2 logn) which is worse than the Fibonacci and 2-3 heap implementations' O(n2 +nlogn) time. A Fibonacci heap is a heap data structure similar to the binomial heap, only with a few modifications and a looser structure.The Fibonacci heap was designed in order to improve Dijkstra's shortest path algorithm from O(m \log n) to O(m + n \log n) by optimising the operations used most by the algorithm. As a result of a relaxed structure, some operations can take a long time while others are done very quickly.

{\displaystyle {\textbf {size}}(x)\geq 2+\sum _{i=2}^{d}{\textbf {size}}(y_{i})\geq 2+\sum _{i=2}^{d}F_{i}=1+\sum _{i=0}^{d}F_{i}.}. The trees do not have a prescribed shape and in the extreme case the heap can have every element in a separate tree. Insert x into root list and update H(min). Fibonacci Heaps Lecture slides adapted from: ¥ Chapter 20 of Introduction to Algorithms by Cormen, Leiserson, Rivest, and Stein. We will soon be discussing Fibonacci Heap operations in detail. Since the goal is to find a way to minimize the number of operations needed to compute the MST or SP, the kind of operations that we are interested in are insert, decrease-key, merge, and delete . This is a Java Program to implement Fibonacci Heap. Therefore, to benefit from Fibonacci heaps in practice , you have to use them in an application where decrease_keys are incredibly frequent. [2] This means that starting from an empty data structure, any sequence of a insert and decrease key operations and b delete operations would take O(a + b log n) worst case time, where n is the maximum heap size. The degree bound follows from this and the fact (easily proved by induction) that d Operations defined as follows: meld(pq₁, pq₂): Use addition to combine all the trees. ( ≥ Describing find-minimum as amortized O(1) is misleading. φ Function names assume a min-heap. [2] Deleting an element (most often used in the special case of deleting the minimum element) works in O(log n) amortized time, where n is the size of the heap. Supports JDK 8 and above + y This is achieved by the rule that we can cut at most one child of each non-root node. A JavaScript implementation of the Fibonacci heap data structure. - fast find-min 23 7 30 17 35 26 46 24 H 39 18 52 41 3 44 min 6 . (

To find trees of the same degree efficiently we use an array of length O(log n) in which we keep a pointer to one root of each degree. / i +

Fibonacci Heap | Set 1 (Introduction) - GeeksforGeeks PDF Lecture 3: Fibonacci Heaps Base case: If x has height 0, then d = 0, and size(x) = 1 = F2. Strict fibonacci heaps. C code for fibonacci Heap Tree. Here is a implementation in Java 1.6 of the Fibonacci heap.It supports the following operations - insert, extract min, decrease key. Introduction to Fibonacci Heap - hello ML [67], CPython 3. Therefore, the number of marked nodes changes by −(k − 1) + 1 = − k + 2. i Features. ∑ This little project aims to measure the performance of different implementation of one of the most known single source shortest path algorithm, Dijkstra's shortest path algorithm. 2 Here we show that the size of the (sub)tree rooted at any node x of degree d in the heap must have size at least Fd+2, where Fk is the kth Fibonacci number. The core algorithm came to twenty-five lines. Fibonacci Heap implementation in Pure Python. This takes constant time, and the potential increases by one, because the number of trees increases. It does not change the potential of the heap, therefore both actual and amortized cost are constant.

2 We present the first pointer-based heap implementation with time bounds matching those of Fibonacci heaps in the worst case. i - Fuses O(log n) trees.Total time: O(log n). Michael L. Fredman and Robert E. Tarjan developed Fibonacci heaps in 1984 and published them in a scientific journal in 1987. It is possible to create a data structure which has the same worst-case performance as the Fibonacci heap has amortized performance. PDF Dijkstra's Algorithm with Fibonacci Heaps: An Executable ... These two properties are the characteristics of the trees present on a fibonacci heap. ≥ Binomial heaps, on the other hand, consolidate immediately. Implementation follows Fredman and Tarjan's 1987 paper. Union of two Fibonacci heaps Tree1 and Tree2 can be accomplished by following algorithm: It works by first making a root out of each of the minimum node’s children and removing the minimum node from the root list. dequeueMin and delete each run . Represent trees using left-child, right sibling pointers and circular, doubly linked list. From the Computer Science lecture course at Cambridge University, taught by Damon Wischik.Lecture notes: https://www.cl.cam.ac.uk/teaching/2021/Algorithms/no. Because the potential of H does not change, the amortized cost of this operation is equal to its O(1) actual cost. Its degree will increase by one. Repeat steps 4 and 5 until the heap is completed. The amortized running time of this operation is O(log n). You can see the comparison run times on repl.it for yourself. Active 2 years, 9 months ago. i {\displaystyle F_{d+2}\geq \varphi ^{d}} www.growingwiththeweb.com/data-structures/fibonacci-heap/overview/, Store keys with optional associated values, Optional custom compare function that can utilize both key and value to give full control over the order of the data. - can quickly splice off subtrees Roots of trees connected with circular doubly linked list. ( This can be done in constant time and the potential does not change, leading again to constant amortized time. = Fibonacci heap is a popular data structure, used for priority queue operations, developed by Tarjan and Fredman around 1984-87, that is a compendium of heap-ordered trees. tldr; A heap is a tree-based data structure that satisfies the "heap" property.Binary heaps, which are this article's focus, must also be "complete" or "almost complete" Heaps are often used to implement priority queues because the offer attractive time complexity for the pop operation; Fibonacci heaps offer a more optimal implementation than the binary heap In particular, degrees of nodes (here degree means the number of direct children) are kept quite low: every node has degree at most log n and the size of a subtree rooted in a node of degree k is at least Fk+2, where Fk is the kth Fibonacci number. 5 This unit of time can be used later to link this tree with another tree at amortized time 0. = The Fibonacci heap ruins my life. The Single Source Shortest Path Problem is a simple, common, but practically applicable problem in the realm of algorithms with real-world applications and consequences. F An implementation of Fibonacci heap. Add ‘x’ to the root list, updating min pointer if necessary. First we take the root containing the minimum element and remove it. Bianary heap and Fibonacci heap don't have the same complexities. A Fibonacci heap is essentially just a list of trees, with each tree being a heap. Fibonacci Heaps Fibonacci Heaps is a more sophisticated implementation of heaps. Implement Fibonacci Heap, Java, Data Structure Similar Programs Chapter Last Updated; HashMap Implementation In Java: Data Structures: 07-07-2018: Linked List Implementation In Java: Data Structures: 09-03-2018: Queue Implementation In Java: Data Structures: 22-09-2018: Stack Implementation In Java: Data Structures: But why they did not use a Fibonacci heap? Fibonacci Heaps. Additionally, the delete operati. d Finally, operation delete can be implemented simply by decreasing the key of the element to be deleted to minus infinity, thus turning it into the minimum of the whole heap. - fast union Pointer to root of tree with min element. Comparing the time complexities of the two versions of Jarnik's algorithms, mentioned in (a) and (b), we can see that |E| is greater than |V|, the Jarnik's algorithm with the Fibonacci-heap implementation will be asymptotically . A JavaScript implementation of the Fibonacci heap data structure. I decided to test out my implementation of the Fibonacci heap vs. the heapq algorithm module in Python which implements a basic binary heap using array indexing for the nodes. I banged out the code as I sat in a coffee shop with some other people from the Recurse Center. ∑ From the Computer Science lecture course at Cambridge University, taught by Damon Wischik.Lecture notes: https://www.cl.cam.ac.uk/teaching/2021/Algorithms/no. Additionally, the delete operati. It's similar to the standard library's heapq module. heap-ordered). In Fibonacci Heap, trees can have any shape even all trees can be single nodes (This is unlike Binomial Heap where every tree has to be Binomial Tree). The Fibonacci heap did in fact run more slowly when trying to extract all the minimum nodes. The Fibonacci heap is a rather specialized data structure. F This page uses content from Wikipedia. 7. Recent experimental results suggest that Fibonacci heaps are more efficient in practice than most of its later derivatives, including quake heaps, violation heaps, strict Fibonacci heaps, rank pairing heaps, but less efficient than either pairing heaps or array-based heaps. i

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